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  "Date": "2016-05-10",
  "Title": "Somatic Copy Number Alteration Analysis Using Sequencing and SNP\nArray Data",
  "Author": "Zhongyang Zhang [aut, cre], Ke Hao [aut], Nancy R. Zhang [ctb]",
  "Maintainer": "Zhongyang Zhang <zhongyang.zhang@mssm.edu>",
  "Description": "Perform joint segmentation on two signal dimensions\nderived from total read depth (intensity) and allele specific\nread depth (intensity) for whole genome sequencing (WGS), whole\nexome sequencing (WES) and SNP array data.",
  "License": "GPL (>= 2)",
  "URL": "https://zhangz05.u.hpc.mssm.edu/saasCNV/",
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        "saasCNV"
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      "title": "Visualize Genome-Wide SCNA Profile",
      "topics": [
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      "title": "Internal Functions and Data",
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        "cnv.data.chr",
        "compute.baseline",
        "compute.baseline.manual",
        "compute.var",
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      "title": "Refine Segment Boundaries",
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      "title": "Covert VCF File to A Data Frame",
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